SRTsim is an independent, reproducible, and flexible SRT simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in SRTsim: reference-based and reference-free.

Cite SRTsim

Jiaqiang Zhu, Lulu Shang and Xiang Zhou#. SRTsim: A simulator for spatially resolved transcriptomics., 2022

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